If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ), 'gf_id' => 'HOM05D000803', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000803' ), 'data_identifier' => 'HOM05D000803', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000803', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30370' => 'bna', 'A04p12840' => 'bna', 'A05p34050' => 'bna', 'A06p01330' => 'bna', 'A06p03220' => 'bna', 'A07p05200' => 'bna', 'A07p42400' => 'bna', 'A09p02810' => 'bna', 'A09p68260' => 'bna', 'Aa31LG10G2100' => 'aar', 'Aa31LG10G2110' => 'aar', 'Aa31LG10G2120' => 'aar', 'Aa31LG10G3930' => 'aar', 'Aa31LG1G20980' => 'aar', 'Aa31LG4G6830' => 'aar', 'Aa31LG5G2910' => 'aar', 'Aa31LG8G13260' => 'aar', 'Aa31LG8G2590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3352' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4096' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3566' => 'aag', 'Actinidia03442' => 'ach', 'Actinidia04326' => 'ach', 'Actinidia09678' => 'ach', 'Actinidia10643' => 'ach', 'Actinidia15169' => 'ach', 'Actinidia16586' => 'ach', 'Actinidia17785' => 'ach', 'Actinidia17869' => 'ach', 'Actinidia18765' => 'ach', 'Actinidia27959' => 'ach', 'Actinidia29509' => 'ach', 'Ah.01g019580' => 'amhyb', 'Ah.05g169330' => 'amhyb', 'Ah.06g184020' => 'amhyb', 'AL1G13170' => 'aly', 'AL1G51610' => 'aly', 'AL1G57960' => 'aly', 'AL2G36910' => 'aly', 'AL3G27860' => 'aly', 'AL3G47330' => 'aly', 'AL6G49370' => 'aly', 'Aqoxy1G02471' => 'aox', 'Aqoxy4G00864' => 'aox', 'Aqoxy5G00856' => 'aox', 'Aqoxy6G01301' => 'aox', 'Aqoxy7G01361' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12I364' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2JA7D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L9GNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X0IV6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4B04P3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P83Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y22KH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7N4CEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B02PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7T9WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS7DLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SVRA7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3H83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WT2SCQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XK55PB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQD386' => 'arhy', 'AT1G03680' => 'ath', 'AT1G43560' => 'ath', 'AT1G50320' => 'ath', 'AT1G76760' => 'ath', 'AT2G15570' => 'ath', 'AT3G15360' => 'ath', 'AT4G03520' => 'ath', 'AT4G12170' => 'ath', 'ATR0584G027' => 'atr', 'ATR0618G274' => 'atr', 'ATR0820G081' => 'atr', 'ATR1136G186' => 'atr', 'Atru.chr11.1152' => 'acertr', 'Atru.chr13.1667' => 'acertr', 'Atru.chr13.2085' => 'acertr', 'Atru.chr2.2669' => 'acertr', 'Atru.chr5.2683' => 'acertr', 'Atru.chr6.3002' => 'acertr', 'AUR62011352' => 'cqu', 'AUR62013476' => 'cqu', 'AUR62016710' => 'cqu', 'AUR62026795' => 'cqu', 'AUR62029378' => 'cqu', 'AUR62034259' => 'cqu', 'AUR62034283' => 'cqu', 'AUR62040603' => 'cqu', 'BcaB01g01903' => 'bca', 'BcaB01g02472' => 'bca', 'BcaB01g02541' => 'bca', 'BcaB03g16303' => 'bca', 'BcaB04g17125' => 'bca', 'BcaB06g27411' => 'bca', 'BcaB06g27413' => 'bca', 'BcaB06g29567' => 'bca', 'BcaB07g33985' => 'bca', 'BcaC01g03878' => 'bca', 'BcaC01g06669' => 'bca', 'BcaC01g06749' => 'bca', 'BcaC04g23966' => 'bca', 'BcaC05g28978' => 'bca', 'BcaC06g36066' => 'bca', 'BcaC07g42234' => 'bca', 'BcaC07g42239' => 'bca', 'BcaC08g42810' => 'bca', 'BolC3t15981H' => 'bol', 'BolC3t17040H' => 'bol', 'BolC5t33867H' => 'bol', 'BolC6t35646H' => 'bol', 'BolC6t36613H' => 'bol', 'BolC6t40121H' => 'bol', 'BolC8t52796H' => 'bol', 'BolC9t53214H' => 'bol', 'BraA03t12220Z' => 'bra', 'BraA03t13077Z' => 'bra', 'BraA04t16948Z' => 'bra', 'BraA05t22226Z' => 'bra', 'BraA06t23533Z' => 'bra', 'BraA07t28313Z' => 'bra', 'BraA07t31766Z' => 'bra', 'BraA09t35922Z' => 'bra', 'BraA09t42161Z' => 'bra', 'C03p36670' => 'bna', 'C05p51810' => 'bna', 'C06p00210' => 'bna', 'C06p05410' => 'bna', 'C06p50970' => 'bna', 'C07p08310' => 'bna', 'C08p52700' => 'bna', 'C09p02890' => 'bna', 'CAN.G1041.38' => 'can', 'CAN.G1110.55' => 'can', 'CAN.G1215.9' => 'can', 'CAN.G162.65' => 'can', 'CAN.G1655.1' => 'can', 'CAN.G282.48' => 'can', 'CAN.G739.6' => 'can', 'CANSAT25G2304' => 'cansat', 'CANSAT25G2413' => 'cansat', 'CANSAT25G2976' => 'cansat', 'CANSAT56G3897' => 'cansat', 'CANSAT78G0634' => 'cansat', 'CARHR003010' => 'chi', 'CARHR035380' => 'chi', 'CARHR039560' => 'chi', 'CARHR039580' => 'chi', 'CARHR070300' => 'chi', 'CARHR090400' => 'chi', 'CARHR105840' => 'chi', 'CARHR221270' => 'chi', 'CARHR221280' => 'chi', 'CARHR251960' => 'chi', 'Carub.0001s0278' => 'cru', 'Carub.0001s3456' => 'cru', 'Carub.0001s3942' => 'cru', 'Carub.0001s4213' => 'cru', 'Carub.0001s4214' => 'cru', 'Carub.0002s2367' => 'cru', 'Carub.0003s1508' => 'cru', 'Carub.0003s2934' => 'cru', 'Carub.0006s3354' => 'cru', 'Ca_01835_v3' => 'car', 'Ca_10681_v3' => 'car', 'Ca_12189_v3' => 'car', 'Ca_16644_v3' => 'car', 'Ca_18698_v3' => 'car', 'Ca_29009_v3' => 'car', 'Ca_30577_v3' => 'car', 'CBR_g7994' => 'cbr', 'Cc00_g16790' => 'ccan', 'Cc02_g18890' => 'ccan', 'Cc05_g12140' => 'ccan', 'Cc10_g14920' => 'ccan', 'CDE02G1801' => 'cde', 'CDE02G2128' => 'cde', 'CDE02G3546' => 'cde', 'CDE04G3619' => 'cde', 'CDE05G1384' => 'cde', 'CDE06G0325' => 'cde', 'CDE08G1588' => 'cde', 'CDE08G1628' => 'cde', 'Cfa004528' => 'cfa', 'Cfa008764' => 'cfa', 'Cfa014608' => 'cfa', 'Cfa018313' => 'cfa', 'Cfa018382' => 'cfa', 'Cfa020599' => 'cfa', 'Ciclev10002404m.g' => 'ccl', 'Ciclev10002691m.g' => 'ccl', 'Ciclev10009624m.g' => 'ccl', 'Ciclev10029394m.g' => 'ccl', 'Ciclev10032824m.g' => 'ccl', 'CiPaw.04G125600' => 'cil', 'CiPaw.05G007000' => 'cil', 'CiPaw.05G170800' => 'cil', 'CiPaw.11G168300' => 'cil', 'CiPaw.12G117500' => 'cil', 'CiPaw.15G015200' => 'cil', 'CiPaw.15G022700' => 'cil', 'CiPaw.16G011100' => 'cil', 'CiPaw.16G018600' => 'cil', 'ClCG02G005980' => 'cla', 'ClCG08G002220' => 'cla', 'ClCG08G006360' => 'cla', 'ClCG10G006910' => 'cla', 'COL.COLO4_09407' => 'col', 'COL.COLO4_29854' => 'col', 'COL.COLO4_32642' => 'col', 'COL.COLO4_33073' => 'col', 'COL.COLO4_33803' => 'col', 'Cpa.g.c31520' => 'cpa', 'Cpa.g.sc1027.2' => 'cpa', 'Cpa.g.sc26.89' => 'cpa', 'Cpa.g.sc34.153' => 'cpa', 'Cpa.g.sc62.1' => 'cpa', 'Cpa.g.sc809.1' => 'cpa', 'Cre01.g052250' => 'cre', 'Cre10.g446100' => 'cre', 'Cre16.g656600' => 'cre', 'CsaV3_3G006270' => 'csa', 'CsaV3_6G031060' => 'csa', 'CsaV3_7G008540' => 'csa', 'CSS0005658' => 'camsi', 'CSS0006354' => 'camsi', 'CSS0007021' => 'camsi', 'CSS0012956' => 'camsi', 'CSS0013098' => 'camsi', 'CSS0028056' => 'camsi', 'CSS0035072' => 'camsi', 'CSS0035181' => 'camsi', 'CSS0035345' => 'camsi', 'CSS0038920' => 'camsi', 'CSS0041010' => 'camsi', 'DCAR_001116' => 'dca', 'DCAR_002593' => 'dca', 'DCAR_010094' => 'dca', 'DCAR_013094' => 'dca', 'DCAR_019548' => 'dca', 'DCAR_022018' => 'dca', 'Dinv15720' => 'din', 'Dinv17639' => 'din', 'Dinv23645' => 'din', 'Dinv25794' => 'din', 'Dinv25877' => 'din', 'Dinv26426' => 'din', 'Dinv41069' => 'din', 'Duzib041G0735' => 'dzi', 'Duzib052G0208' => 'dzi', 'Duzib093G2147' => 'dzi', 'Duzib116G0494' => 'dzi', 'Duzib116G0573' => 'dzi', 'Duzib132G0129' => 'dzi', 'Duzib132G0535' => 'dzi', 'Duzib132G0608' => 'dzi', 'Duzib170G1056' => 'dzi', 'Duzib213G0945' => 'dzi', 'Duzib248G1282' => 'dzi', 'ECA232G0506' => 'eca', 'ECA236G4303' => 'eca', 'ECA240G0042' => 'eca', 'ECA246G4531' => 'eca', 'EL10Ac1g01445' => 'bvu', 'EL10Ac1g01567' => 'bvu', 'EL10Ac4g08149' => 'bvu', 'EL10Ac9g21749' => 'bvu', 'Eucgr.A01813' => 'egr', 'Eucgr.F02754' => 'egr', 'Eucgr.F03319' => 'egr', 'Eucgr.F04223' => 'egr', 'Eucgr.F04229' => 'egr', 'Eucgr.J00880' => 'egr', 'Eucgr.L03049' => 'egr', 'FAN02G1940' => 'fan', 'FAN02G4328' => 'fan', 'FAN05G1882' => 'fan', 'FAN07G2540' => 'fan', 'FAN09G4476' => 'fan', 'FAN09G4567' => 'fan', 'FAN12G0291' => 'fan', 'FAN15G0609' => 'fan', 'FAN15G1342' => 'fan', 'FAN15G1904' => 'fan', 'FAN16G2378' => 'fan', 'FAN20G0142' => 'fan', 'FAN20G1066' => 'fan', 'FAN21G2949' => 'fan', 'FAN22G0075' => 'fan', 'FAN24G1956' => 'fan', 'FAN24G3234' => 'fan', 'FAN24G3431' => 'fan', 'FAN25G0768' => 'fan', 'FAN27G1713' => 'fan', 'FAN27G3006' => 'fan', 'FAN27G3502' => 'fan', 'FvH4_2g05860' => 'fve', 'FvH4_2g13460' => 'fve', 'FvH4_2g14900' => 'fve', 'FvH4_3g20140' => 'fve', 'FvH4_4g06760' => 'fve', 'FvH4_6g26180' => 'fve', 'Glyma.02G102400' => 'gma', 'Glyma.04G242000' => 'gma', 'Glyma.06G121400' => 'gma', 'Glyma.06G245200' => 'gma', 'Glyma.07G213700' => 'gma', 'Glyma.10G224100' => 'gma', 'Glyma.10G285000' => 'gma', 'Glyma.12G151400' => 'gma', 'Glyma.12G223400' => 'gma', 'Glyma.13G277900' => 'gma', 'Glyma.20G104000' => 'gma', 'Glyma.20G167700' => 'gma', 'Gohir.A02G067900' => 'ghi', 'Gohir.A03G188500' => 'ghi', 'Gohir.A04G029200' => 'ghi', 'Gohir.A04G104000' => 'ghi', 'Gohir.A04G109000' => 'ghi', 'Gohir.A05G241300' => 'ghi', 'Gohir.A05G244100' => 'ghi', 'Gohir.A12G023500' => 'ghi', 'Gohir.A13G145400' => 'ghi', 'Gohir.D02G073900' => 'ghi', 'Gohir.D02G209200' => 'ghi', 'Gohir.D03G061701' => 'ghi', 'Gohir.D04G143700' => 'ghi', 'Gohir.D04G148500' => 'ghi', 'Gohir.D05G242600' => 'ghi', 'Gohir.D05G245100' => 'ghi', 'Gohir.D05G357900' => 'ghi', 'Gohir.D12G024100' => 'ghi', 'Gohir.D13G150300' => 'ghi', 'Gorai.005G083300' => 'gra', 'Gorai.005G237300' => 'gra', 'Gorai.008G024500' => 'gra', 'Gorai.009G251900' => 'gra', 'Gorai.009G254900' => 'gra', 'Gorai.009G390300' => 'gra', 'Gorai.009G390500' => 'gra', 'Gorai.012G129200' => 'gra', 'Gorai.012G134800' => 'gra', 'Gorai.013G106400' => 'gra', 'Gorai.013G168000' => 'gra', 'GSVIVG01004876001' => 'vvi', 'GSVIVG01010012001' => 'vvi', 'GSVIVG01014360001' => 'vvi', 'GSVIVG01020537001' => 'vvi', 'GSVIVG01026149001' => 'vvi', 'GSVIVG01031727001' => 'vvi', 'GSVIVG01034548001' => 'vvi', 'HanXRQChr03g0078551' => 'han', 'HanXRQChr04g0109501' => 'han', 'HanXRQChr10g0302791' => 'han', 'HanXRQChr11g0320301' => 'han', 'HanXRQChr11g0328441' => 'han', 'HanXRQChr11g0331381' => 'han', 'HanXRQChr13g0407021' => 'han', 'HanXRQChr16g0515051' => 'han', 'Haze_09415' => 'cav', 'Haze_10086' => 'cav', 'Haze_11775' => 'cav', 'Haze_13155' => 'cav', 'Haze_17690' => 'cav', 'Haze_17764' => 'cav', 'Haze_27735' => 'cav', 'Hma1.2p1_0105F.1_g050550' => 'hma', 'Hma1.2p1_0370F.1_g137720' => 'hma', 'Hma1.2p1_0474F.1_g160490' => 'hma', 'Hma1.2p1_0480F.1_g161820' => 'hma', 'Hma1.2p1_0655F.1_g196720' => 'hma', 'Hma1.2p1_0932F.1_g238250' => 'hma', 'Hma1.2p1_1620F.1_g294000' => 'hma', 'Hma1.2p1_2059F.1_g312900' => 'hma', 'Hma1.2p1_2210F.1_g317170' => 'hma', 'HPP92_001512' => 'vpl', 'HPP92_004410' => 'vpl', 'HPP92_019363' => 'vpl', 'HPP92_025993' => 'vpl', 'Hund02214' => 'sun', 'Hund06223' => 'sun', 'Hund17447' => 'sun', 'Hund22925' => 'sun', 'Lalb_Chr01g0016891' => 'lal', 'Lalb_Chr02g0141441' => 'lal', 'Lalb_Chr02g0143601' => 'lal', 'Lalb_Chr03g0030611' => 'lal', 'Lalb_Chr08g0240851' => 'lal', 'Lalb_Chr09g0328391' => 'lal', 'Lalb_Chr11g0066361' => 'lal', 'Lalb_Chr25g0286451' => 'lal', 'Lj1g0017276' => 'lja', 'Lj1P844T33' => 'lonja', 'Lj3g0012482' => 'lja', 'Lj3g0020009' => 'lja', 'Lj3g0020095' => 'lja', 'Lj4A698T61' => 'lonja', 'Lj4g0011166' => 'lja', 'Lj4P690T14' => 'lonja', 'Lj5g0005958' => 'lja', 'Lj5g0019278' => 'lja', 'Lj7P362T31' => 'lonja', 'Lj8P156T30' => 'lonja', 'Lsat_1_v5_gn_1_9760' => 'lsa', 'Lsat_1_v5_gn_1_9780' => 'lsa', 'Lsat_1_v5_gn_3_36620' => 'lsa', 'Lsat_1_v5_gn_7_105180' => 'lsa', 'Lsat_1_v5_gn_7_86840' => 'lsa', 'Lsat_1_v5_gn_9_41160' => 'lsa', 'Lsat_1_v5_gn_9_96840' => 'lsa', 'Manes.02G173600' => 'mes', 'Manes.02G180500' => 'mes', 'Manes.03G111300' => 'mes', 'Manes.07G072300' => 'mes', 'Manes.13G077841' => 'mes', 'Manes.13G147100' => 'mes', 'Manes.18G086200' => 'mes', 'Manes.18G093000' => 'mes', 'Mapoly0022s0050' => 'mpo', 'Mapoly0164s0015' => 'mpo', 'Mapoly0166s0016' => 'mpo', 'MBI03_g35245_MAGBIO' => 'mbi', 'MBI03_g35246_MAGBIO' => 'mbi', 'MBI06_g27502_MAGBIO' => 'mbi', 'MBI06_g29672_MAGBIO' => 'mbi', 'MBI09_g13284_MAGBIO' => 'mbi', 'MBI16_g18334_MAGBIO' => 'mbi', 'MCO01G714' => 'mco', 'MCO03G062' => 'mco', 'MCO13G056' => 'mco', 'MCO13G136' => 'mco', 'MD03G1226200' => 'mdo', 'MD05G1011900' => 'mdo', 'MD05G1027800' => 'mdo', 'MD05G1082500' => 'mdo', 'MD10G1011900' => 'mdo', 'MD10G1028500' => 'mdo', 'MD11G1244900' => 'mdo', 'MD15G1433100' => 'mdo', 'Medtr1g098660' => 'mtr', 'Medtr1g114290' => 'mtr', 'Medtr2g079340' => 'mtr', 'Medtr2g079360' => 'mtr', 'Medtr2g079380' => 'mtr', 'Medtr2g079400' => 'mtr', 'Medtr2g079420' => 'mtr', 'Medtr3g089065' => 'mtr', 'Medtr4g085880' => 'mtr', 'Medtr8g059015' => 'mtr', 'MELO3C008421.2' => 'cme', 'MELO3C016516.2' => 'cme', 'MELO3C018455.2' => 'cme', 'MELO3C025023.2' => 'cme', 'Migut.B00357' => 'egut', 'Migut.C00985' => 'egut', 'Migut.E00687' => 'egut', 'Migut.H01932' => 'egut', 'Migut.M00815' => 'egut', 'Migut.N03209' => 'egut', 'Migut.O00873' => 'egut', 'MSTRG.13680' => 'ama', 'MSTRG.15223' => 'ama', 'MSTRG.16734' => 'ama', 'MSTRG.20163' => 'ama', 'MSTRG.24215' => 'ama', 'MSTRG.25310' => 'ama', 'MSTRG.27729' => 'ama', 'Nitab4.5_0000069g0180' => 'nta', 'Nitab4.5_0000207g0140' => 'nta', 'Nitab4.5_0000332g0020' => 'nta', 'Nitab4.5_0001187g0140' => 'nta', 'Nitab4.5_0001428g0120' => 'nta', 'Nitab4.5_0001551g0090' => 'nta', 'Nitab4.5_0002383g0100' => 'nta', 'Nitab4.5_0002387g0050' => 'nta', 'Nitab4.5_0002497g0030' => 'nta', 'Nitab4.5_0003080g0060' => 'nta', 'Nitab4.5_0003688g0090' => 'nta', 'Nitab4.5_0008149g0020' => 'nta', 'Nitab4.5_0013630g0030' => 'nta', 'Nn1g04074' => 'nnu', 'Nn1g04823' => 'nnu', 'Nn1g06068' => 'nnu', 'Nn1g06260' => 'nnu', 'Nn1g06573' => 'nnu', 'Nn3g18624' => 'nnu', 'Nn5g28570' => 'nnu', 'Nn5g28767' => 'nnu', 'Nn7g35828' => 'nnu', 'Oeu005416.1' => 'oeu', 'Oeu006340.1' => 'oeu', 'Oeu011683.1' => 'oeu', 'Oeu013717.2' => 'oeu', 'Oeu023261.1' => 'oeu', 'Oeu023262.1' => 'oeu', 'Oeu046045.2' => 'oeu', 'Oeu060548.2' => 'oeu', 'Os01g0963400' => 'osa', 'Os02g0639900' => 'osa', 'Os04g0430800' => 'osa', 'Os04g0530600' => 'osa', 'Os04g0676100' => 'osa', 'Os12g0188700' => 'osa', 'Peaxi162Scf00000g04014' => 'pax', 'Peaxi162Scf00016g01936' => 'pax', 'Peaxi162Scf00021g02221' => 'pax', 'Peaxi162Scf00027g02614' => 'pax', 'Peaxi162Scf00069g01330' => 'pax', 'Peaxi162Scf00206g01013' => 'pax', 'Peaxi162Scf00599g00122' => 'pax', 'PGR031G2273' => 'pgr', 'PGR042G0969' => 'pgr', 'PGR042G1886' => 'pgr', 'PGR042G2354' => 'pgr', 'PGR044G0351' => 'pgr', 'PGR044G2288' => 'pgr', 'PGR100G0008' => 'pgr', 'PGSC0003DMG400012420' => 'stu', 'PGSC0003DMG400015360' => 'stu', 'PGSC0003DMG400016361' => 'stu', 'PGSC0003DMG400021685' => 'stu', 'PGSC0003DMG400024095' => 'stu', 'PGSC0003DMG400025034' => 'stu', 'PGSC0003DMG400025887' => 'stu', 'Phvul.003G027800' => 'pvu', 'Phvul.005G071200' => 'pvu', 'Phvul.007G015500' => 'pvu', 'Phvul.007G080600' => 'pvu', 'Phvul.009G133900' => 'pvu', 'Phvul.011G157700' => 'pvu', 'Potri.001G401500' => 'ptr', 'Potri.002G066800' => 'ptr', 'Potri.002G073000' => 'ptr', 'Potri.005G058400' => 'ptr', 'Potri.005G186800' => 'ptr', 'Potri.005G193400' => 'ptr', 'Potri.007G074000' => 'ptr', 'Potri.009G100700' => 'ptr', 'Potri.011G120700' => 'ptr', 'Potri.013G132200' => 'ptr', 'Potri.019G111200' => 'ptr', 'Pp3c16_11170' => 'ppa', 'Pp3c16_11171' => 'ppa', 'Pp3c16_11180' => 'ppa', 'Pp3c24_4980' => 'ppa', 'Pp3c25_2880' => 'ppa', 'Pp3c26_10440' => 'ppa', 'Pp3c5_23070' => 'ppa', 'Pp3c6_10040' => 'ppa', 'Pp3c6_10090' => 'ppa', 'Pp3c8_8140' => 'ppa', 'PRCOL_00000229' => 'pco', 'PRCOL_00005942' => 'pco', 'Prupe.1G070700' => 'ppe', 'Prupe.3G137100' => 'ppe', 'Prupe.4G183200' => 'ppe', 'Prupe.8G016900' => 'ppe', 'Prupe.8G033500' => 'ppe', 'Prupe.8G126900' => 'ppe', 'Psat1g027360' => 'psa', 'Psat5g081600' => 'psa', 'Psat5g229000' => 'psa', 'Psat5g242680' => 'psa', 'Psat6g233480' => 'psa', 'Psat7g125280' => 'psa', 'Psat7g125320' => 'psa', 'Psat7g125360' => 'psa', 'PSO017G2523' => 'pso', 'PSO063G3598' => 'pso', 'PSO170G1307' => 'pso', 'PSO541G1660' => 'pso', 'PSO541G3025' => 'pso', 'PSO541G4819' => 'pso', 'PSO675G5392' => 'pso', 'PSO675G6321' => 'pso', 'PSO675G7586' => 'pso', 'PSO734G0001' => 'pso', 'PSO782G1772' => 'pso', 'QL02p037810' => 'qlo', 'QL02p038779' => 'qlo', 'QL02p049512' => 'qlo', 'QL02p049515' => 'qlo', 'QL03p046068' => 'qlo', 'QL03p046129' => 'qlo', 'QL08p021421' => 'qlo', 'QL08p038638' => 'qlo', 'QL09p029015' => 'qlo', 'QL11p035638' => 'qlo', 'RcHm_v2.0_Chr2g0126351' => 'rch', 'RcHm_v2.0_Chr2g0145041' => 'rch', 'RcHm_v2.0_Chr4g0398691' => 'rch', 'RcHm_v2.0_Chr5g0033941' => 'rch', 'RcHm_v2.0_Chr6g0257721' => 'rch', 'RcHm_v2.0_Chr6g0275081' => 'rch', 'RcHm_v2.0_Chr6g0277471' => 'rch', 'Rhsim02G0182000' => 'rsi', 'Rhsim05G0086100' => 'rsi', 'Rhsim06G0091500' => 'rsi', 'Rhsim06G0197400' => 'rsi', 'Rhsim09G0069900' => 'rsi', 'Rhsim11G0077200' => 'rsi', 'RhsimUnG0173800' => 'rsi', 'Sabra02G0053100' => 'sbr', 'Sabra05G0050200' => 'sbr', 'Sabra05G0142700' => 'sbr', 'Sabra05G0147800' => 'sbr', 'Sabra07G0061800' => 'sbr', 'Sabra07G0089600' => 'sbr', 'Sabra09G0076500' => 'sbr', 'Sabra11G0104700' => 'sbr', 'Sabra16G0263500' => 'sbr', 'SalBow2G0636' => 'sbo', 'SalBow6G3874' => 'sbo', 'SalBow6G5324' => 'sbo', 'SalBow7G0702' => 'sbo', 'SalBow7G1797' => 'sbo', 'SalBow7G1844' => 'sbo', 'SalBow7G3643' => 'sbo', 'SalBow7G3672' => 'sbo', 'Sc02g0004820' => 'sci', 'Sc07g0002590' => 'sci', 'Sc16g0006930' => 'sci', 'Sc18g0004120' => 'sci', 'Sc20g0003590' => 'sci', 'Sed0012698' => 'sed', 'Sed0014094' => 'sed', 'Sed0025064' => 'sed', 'Sed0026952' => 'sed', 'SEGI_04482' => 'sgi', 'SEGI_08164' => 'sgi', 'SEGI_39306' => 'sgi', 'SGA_v2.0_scaffold24G10301' => 'sas', 'SGA_v2.0_scaffold306G48029' => 'sas', 'SGA_v2.0_scaffold73G24271' => 'sas', 'SMO111G0024' => 'smo', 'SMO351G0550' => 'smo', 'SMO353G0239' => 'smo', 'SMO364G0178' => 'smo', 'SMO367G1051' => 'smo', 'Solyc01g008250.3' => 'sly', 'Solyc01g108020.3' => 'sly', 'Solyc04g071560.4' => 'sly', 'Solyc07g063190.3' => 'sly', 'Solyc10g006970.3' => 'sly', 'Solyc10g008390.3' => 'sly', 'Solyc12g013810.2' => 'sly', 'Sopen01g003770' => 'spe', 'Sopen01g050220' => 'spe', 'Sopen04g027540' => 'spe', 'Sopen07g031380' => 'spe', 'Sopen10g002880' => 'spe', 'Sopen10g004220' => 'spe', 'Sopen12g007120' => 'spe', 'Sp1g02560' => 'spa', 'Sp1g32430' => 'spa', 'Sp1g37160' => 'spa', 'Sp1g39550' => 'spa', 'Sp3g13610' => 'spa', 'Sp3g28850' => 'spa', 'Sp5g31910' => 'spa', 'Sp6g03540' => 'spa', 'TAR376G0020' => 'tar', 'TAR381G0004' => 'tar', 'TAR381G0630' => 'tar', 'TAR622G1240' => 'tar', 'TAR626G1587' => 'tar', 'TAR627G0831' => 'tar', 'TAR628G1534' => 'tar', 'TAR628G1599' => 'tar', 'TAR629G0153' => 'tar', 'THA.LOC104801175' => 'tha', 'THA.LOC104808269' => 'tha', 'THA.LOC104809204' => 'tha', 'THA.LOC104810479' => 'tha', 'THA.LOC104812033' => 'tha', 'THA.LOC104812067' => 'tha', 'THA.LOC104815959' => 'tha', 'THA.LOC104818072' => 'tha', 'THA.LOC104819573' => 'tha', 'THA.LOC104826032' => 'tha', 'THA.LOC104826518' => 'tha', 'Thecc.02G102100' => 'tca', 'Thecc.02G157100' => 'tca', 'Thecc.02G179000' => 'tca', 'Thecc.07G082700' => 'tca', 'Thecc.08G141700' => 'tca', 'Thecc.08G154400' => 'tca', 'Thhalv10005020m.g' => 'esa', 'Thhalv10008668m.g' => 'esa', 'Thhalv10011839m.g' => 'esa', 'Thhalv10012400m.g' => 'esa', 'Thhalv10019218m.g' => 'esa', 'Thhalv10021581m.g' => 'esa', 'Thhalv10022881m.g' => 'esa', 'Thhalv10029001m.g' => 'esa', 'TPR.G12522' => 'tpr', 'TPR.G15467' => 'tpr', 'TPR.G17024' => 'tpr', 'TPR.G31512' => 'tpr', 'TPR.G39005' => 'tpr', 'TPR.G4141' => 'tpr', 'TWI31G1344' => 'twi', 'TWI32G0190' => 'twi', 'TWI32G0734' => 'twi', 'TWI34G0692' => 'twi', 'TWI38G0860' => 'twi', 'TWI38G1250' => 'twi', 'TWI60G0648' => 'twi', 'TWI74G0120' => 'twi', 'unitig_0.g2263' => 'ugi', 'unitig_0.g862' => 'ugi', 'unitig_21.g20072' => 'ugi', 'unitig_52.g17401' => 'ugi', 'unitig_699.g19223' => 'ugi', 'unitig_744.g24230' => 'ugi', 'unitig_749.g13915' => 'ugi', 'vmacro00888' => 'vma', 'vmacro09536' => 'vma', 'vmacro11849' => 'vma', 'vmacro12407' => 'vma', 'vmacro15984' => 'vma', 'vmacro19506' => 'vma', 'VMungo0251G1546' => 'vmu', 'VMungo0720G0237' => 'vmu', 'VMungo0720G1024' => 'vmu', 'VMungo1080G1811' => 'vmu', 'VMungo1127G1658' => 'vmu', 'VMungo1309G0986' => 'vmu', 'Zm00001eb066320' => 'zma', 'Zm00001eb075740' => 'zma', 'Zm00001eb082790' => 'zma', 'Zm00001eb138600' => 'zma', 'Zm00001eb140270' => 'zma', 'Zm00001eb185800' => 'zma', 'Zm00001eb248520' => 'zma', 'Zm00001eb409190' => 'zma', 'Zm00001eb433660' => 'zma' ) $gf_id = 'HOM05D000803' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000803' ) $data_identifier = 'HOM05D000803' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433660' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1